Function and chromosomal localization of differentially expressed genes induced by Marssonina brunnea f. sp. multigermtubi in Populus deltoides.
Identifieur interne : 003B89 ( Main/Exploration ); précédent : 003B88; suivant : 003B90Function and chromosomal localization of differentially expressed genes induced by Marssonina brunnea f. sp. multigermtubi in Populus deltoides.
Auteurs : Yanmei Zhang [République populaire de Chine] ; Xinye Zhang ; Yuchen Chen ; Qi Wang ; Mingxiu Wang ; Minren HuangSource :
- Journal of genetics and genomics = Yi chuan xue bao [ 1673-8527 ] ; 2007.
Descripteurs français
- KwdFr :
- Activation de la transcription (MeSH), Analyse de profil d'expression de gènes (MeSH), Ascomycota (physiologie), Chromosomes de plante (génétique), Gènes de plante (génétique), Hybridation génétique (MeSH), Liaison génétique (MeSH), Populus (cytologie), Populus (génétique), Populus (microbiologie), Régulation de l'expression des gènes végétaux (MeSH), Séquençage par oligonucléotides en batterie (MeSH).
- MESH :
- cytologie : Populus.
- génétique : Chromosomes de plante, Gènes de plante, Populus.
- microbiologie : Populus.
- physiologie : Ascomycota.
- Activation de la transcription, Analyse de profil d'expression de gènes, Hybridation génétique, Liaison génétique, Régulation de l'expression des gènes végétaux, Séquençage par oligonucléotides en batterie.
English descriptors
- KwdEn :
- Ascomycota (physiology), Chromosomes, Plant (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (genetics), Genetic Linkage (MeSH), Hybridization, Genetic (MeSH), Oligonucleotide Array Sequence Analysis (MeSH), Populus (cytology), Populus (genetics), Populus (microbiology), Transcriptional Activation (MeSH).
- MESH :
- cytology : Populus.
- genetics : Chromosomes, Plant, Genes, Plant, Populus.
- microbiology : Populus.
- physiology : Ascomycota.
- Gene Expression Profiling, Gene Expression Regulation, Plant, Genetic Linkage, Hybridization, Genetic, Oligonucleotide Array Sequence Analysis, Transcriptional Activation.
Abstract
A total of 1,160 differentially expressed genes induced by Marssonina brunnea f. sp. multigermtubi were identified in Populus deltoides cv. 'Lux' (I-69/55) with two-colour cDNA microarray including 2,952 cDNAs from two cDNA libraries constructed with 72 h inoculated poplar leaves. Functional analysis showed that 1,160 genes were classified into 11 functional categories that are involved in metabolism (15.9%), signal transduction (9.5%), transcription and replication (8.7%), and cell rescue and defense (7.8%). Among them, 926 genes were sporadically localized on 19 linkage groups. Chromosome 2 contained 102 (11%) differentially expressed genes, followed by chromosome 1 which contains 93 genes (10%), and chromosome 17 had the least number of differentially expressed genes. Clustering of expressed sequence tags (ESTs) in poplar genome was observed at the terminal regions of several chromosomes. The relationship between cluster of genes and plant defense response would be further studied.
DOI: 10.1016/S1673-8527(07)60073-3
PubMed: 17643950
Affiliations:
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last="Chen">Yuchen Chen</name></author><author><name sortKey="Wang, Qi" sort="Wang, Qi" uniqKey="Wang Q" first="Qi" last="Wang">Qi Wang</name></author><author><name sortKey="Wang, Mingxiu" sort="Wang, Mingxiu" uniqKey="Wang M" first="Mingxiu" last="Wang">Mingxiu Wang</name></author><author><name sortKey="Huang, Minren" sort="Huang, Minren" uniqKey="Huang M" first="Minren" last="Huang">Minren Huang</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2007">2007</date><idno type="RBID">pubmed:17643950</idno><idno type="pmid">17643950</idno><idno type="doi">10.1016/S1673-8527(07)60073-3</idno><idno type="wicri:Area/Main/Corpus">003B13</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003B13</idno><idno type="wicri:Area/Main/Curation">003B13</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">003B13</idno><idno 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(genetics)</term><term>Genetic Linkage (MeSH)</term><term>Hybridization, Genetic (MeSH)</term><term>Oligonucleotide Array Sequence Analysis (MeSH)</term><term>Populus (cytology)</term><term>Populus (genetics)</term><term>Populus (microbiology)</term><term>Transcriptional Activation (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Activation de la transcription (MeSH)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Ascomycota (physiologie)</term><term>Chromosomes de plante (génétique)</term><term>Gènes de plante (génétique)</term><term>Hybridation génétique (MeSH)</term><term>Liaison génétique (MeSH)</term><term>Populus (cytologie)</term><term>Populus (génétique)</term><term>Populus (microbiologie)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Séquençage par oligonucléotides en batterie (MeSH)</term></keywords><keywords scheme="MESH" qualifier="cytologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term><term>Genes, Plant</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de plante</term><term>Gènes de plante</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Ascomycota</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Ascomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Genetic Linkage</term><term>Hybridization, Genetic</term><term>Oligonucleotide Array Sequence Analysis</term><term>Transcriptional Activation</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Activation de la transcription</term><term>Analyse de profil d'expression de gènes</term><term>Hybridation génétique</term><term>Liaison génétique</term><term>Régulation de l'expression des gènes végétaux</term><term>Séquençage par oligonucléotides en batterie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A total of 1,160 differentially expressed genes induced by Marssonina brunnea f. sp. multigermtubi were identified in Populus deltoides cv. 'Lux' (I-69/55) with two-colour cDNA microarray including 2,952 cDNAs from two cDNA libraries constructed with 72 h inoculated poplar leaves. Functional analysis showed that 1,160 genes were classified into 11 functional categories that are involved in metabolism (15.9%), signal transduction (9.5%), transcription and replication (8.7%), and cell rescue and defense (7.8%). Among them, 926 genes were sporadically localized on 19 linkage groups. Chromosome 2 contained 102 (11%) differentially expressed genes, followed by chromosome 1 which contains 93 genes (10%), and chromosome 17 had the least number of differentially expressed genes. Clustering of expressed sequence tags (ESTs) in poplar genome was observed at the terminal regions of several chromosomes. The relationship between cluster of genes and plant defense response would be further studied.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17643950</PMID><DateCompleted><Year>2009</Year><Month>04</Month><Day>15</Day></DateCompleted><DateRevised><Year>2010</Year><Month>11</Month><Day>18</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">1673-8527</ISSN><JournalIssue CitedMedium="Print"><Volume>34</Volume><Issue>7</Issue><PubDate><Year>2007</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Journal of genetics and genomics = Yi chuan xue bao</Title><ISOAbbreviation>J Genet Genomics</ISOAbbreviation></Journal><ArticleTitle>Function and chromosomal localization of differentially expressed genes induced by Marssonina brunnea f. sp. multigermtubi in Populus deltoides.</ArticleTitle><Pagination><MedlinePgn>641-8</MedlinePgn></Pagination><Abstract><AbstractText>A total of 1,160 differentially expressed genes induced by Marssonina brunnea f. sp. multigermtubi were identified in Populus deltoides cv. 'Lux' (I-69/55) with two-colour cDNA microarray including 2,952 cDNAs from two cDNA libraries constructed with 72 h inoculated poplar leaves. Functional analysis showed that 1,160 genes were classified into 11 functional categories that are involved in metabolism (15.9%), signal transduction (9.5%), transcription and replication (8.7%), and cell rescue and defense (7.8%). Among them, 926 genes were sporadically localized on 19 linkage groups. Chromosome 2 contained 102 (11%) differentially expressed genes, followed by chromosome 1 which contains 93 genes (10%), and chromosome 17 had the least number of differentially expressed genes. Clustering of expressed sequence tags (ESTs) in poplar genome was observed at the terminal regions of several chromosomes. 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